Transcript: CCDC144NL-AS1:24

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:24 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20955817-20956718
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 622 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000579168.1; RP11-344E13.3-013; OTTHUMT00000444058.1; NONHSAT146866
Alternative gene names: ENSG00000233098.3; RP11-344E13.3; OTTHUMG00000178937.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:24 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:19
4.0 CCDC144NL-AS1:24
4.1 CCDC144NL-AS1:24
5.0 CCDC144NL-AS1:24
5.1 CCDC144NL-AS1:24
5.2 CCDC144NL-AS1:24