Transcript: CCDC144NL-AS1:25

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:25 
HGNC Gene Symbol: CCDC144NL-AS1    
HGNC Full Gene Name: CCDC144NL antisense RNA 1
Ensembl Gene ID: ENSG00000233098
Ensembl Transcript ID: ENST00000579168
Location (hg38): chr17:20955817-20958326
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 638 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579168.2; ENST00000579168.6
Alternative gene names: ENSG00000233098.4; RP11-344E13.3; ENSG00000233098.8; CCDC144NL-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:25 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:24
4.0 CCDC144NL-AS1:25
4.1 CCDC144NL-AS1:25
5.0 CCDC144NL-AS1:25
5.1 CCDC144NL-AS1:25
5.2 CCDC144NL-AS1:25