Transcript: CCDC144NL-AS1:26

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:26 
HGNC Gene Symbol: CCDC144NL-AS1    
HGNC Full Gene Name: CCDC144NL antisense RNA 1
Ensembl Gene ID: ENSG00000233098
Ensembl Transcript ID: ENST00000584433
Location (hg38): chr17:20956294-20958721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584433.1; RP11-344E13.3-012; OTTHUMT00000444059.1; ENST00000584433.2
Alternative gene names: ENSG00000233098.3; RP11-344E13.3; OTTHUMG00000178937.2; ENSG00000233098.4; ENSG00000233098.8; CCDC144NL-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.1605 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:26 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:20
4.0 CCDC144NL-AS1:26
4.1 CCDC144NL-AS1:26
5.0 CCDC144NL-AS1:26
5.1 CCDC144NL-AS1:26
5.2 CCDC144NL-AS1:26