Transcript: CCDC144NL-AS1:40

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:40 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20878705-20880110
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1406 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002gyj_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0276 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:40 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-8:1
4.0 lnc-DHRS7B-8:1
4.1 CCDC144NL-AS1:40
5.0 CCDC144NL-AS1:40
5.1 CCDC144NL-AS1:40
5.2 CCDC144NL-AS1:40