Transcript: CCDC144NL-AS1:42

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:42 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20921079-20930046
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1182 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233098.4|ENST00000443508.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.1705 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:42 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CCDC144NL-AS1:42
5.0 CCDC144NL-AS1:42
5.1 CCDC144NL-AS1:42
5.2 CCDC144NL-AS1:42