Transcript: CCDC144NL-AS1:51

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:51 
LNCipedia gene ID: CCDC144NL-AS1
Ensembl Gene ID: ENSG00000263986
Ensembl Transcript ID: ENST00000580962
Location (hg38): chr17:20999747-21000323
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580962.1; RP11-746M1.1-001; OTTHUMT00000444063.1; NONHSAT052141
Alternative gene names: ENSG00000263986.1; RP11-746M1.1; OTTHUMG00000178940.1; ; AC087393.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0716 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:51 yes no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-3:1
4.0 lnc-DHRS7B-3:1
4.1 CCDC144NL-AS1:51
5.0 CCDC144NL-AS1:51
5.1 CCDC144NL-AS1:51
5.2 CCDC144NL-AS1:51