Transcript: CCDC144NL-AS1:8

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:8 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20921025-20929733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 923 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00025161
Alternative gene names: XLOC_012139; linc-DHRS7B-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.0987 non-coding 
CPAT coding probability 3.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:8 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHRS7B-3:1
3.1 lnc-DHRS7B-5:7
4.0 CCDC144NL-AS1:8
4.1 CCDC144NL-AS1:8
5.0 CCDC144NL-AS1:8
5.1 CCDC144NL-AS1:8
5.2 CCDC144NL-AS1:8