Transcript: CCDC18-AS1:20

Basic information

LNCipedia transcript ID: CCDC18-AS1:20 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93326608-93340479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2186 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00001587
Alternative gene names: XLOC_000918; linc-TMED5; ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.2104 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:20 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMED5-1:10
3.1 lnc-TMED5-1:13
4.0 CCDC18-AS1:20
4.1 CCDC18-AS1:20
5.0 CCDC18-AS1:20
5.1 CCDC18-AS1:20
5.2 CCDC18-AS1:20