Transcript: CCDC18-AS1:22

Basic information

LNCipedia transcript ID: CCDC18-AS1:22 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93337309-93339509
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1373 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT004524
Alternative gene names: ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.1555 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:22 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMED5-1:34
4.0 CCDC18-AS1:22
4.1 CCDC18-AS1:22
5.0 CCDC18-AS1:22
5.1 CCDC18-AS1:22
5.2 CCDC18-AS1:22