Transcript: CCDC18-AS1:29

Basic information

LNCipedia transcript ID: CCDC18-AS1:29 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93311280-93337437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000566; ENST00000436200.1; RP4-717I23.3-012; OTTHUMT00000029570.1; NONHSAT004514
Alternative gene names: XLOC_000918; linc-TMED5; ENSG00000223745.1; RP4-717I23.3; OTTHUMG00000010705.3; ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4527 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:29 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMED5-1:15
3.1 lnc-TMED5-1:21
4.0 CCDC18-AS1:29
4.1 CCDC18-AS1:29
5.0 CCDC18-AS1:29
5.1 CCDC18-AS1:29
5.2 CCDC18-AS1:29