Transcript: CCDC18-AS1:32

Basic information

LNCipedia transcript ID: CCDC18-AS1:32 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93261873-93335506
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6939 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1509:1
Alternative gene names: ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.6246 non-coding 
CPAT coding probability 77.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CCDC18-AS1:32 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CCDC18-AS1:32
4.1 CCDC18-AS1:32
5.0 CCDC18-AS1:32
5.1 CCDC18-AS1:32
5.2 CCDC18-AS1:32