Transcript: CCDC18-AS1:36

Basic information

LNCipedia transcript ID: CCDC18-AS1:36 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93305335-93324733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 235 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT004510
Alternative gene names: ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.2945 non-coding 
CPAT coding probability 7.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:36 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMED5-1:37
4.0 CCDC18-AS1:36
4.1 CCDC18-AS1:36
5.0 CCDC18-AS1:36
5.1 CCDC18-AS1:36
5.2 CCDC18-AS1:36