Transcript: CCDC18-AS1:41

Basic information

LNCipedia transcript ID: CCDC18-AS1:41 
HGNC Gene Symbol: CCDC18-AS1    
HGNC Full Gene Name: CCDC18 antisense RNA 1
Ensembl Gene ID: ENSG00000223745
Ensembl Transcript ID: ENST00000427669
Location (hg38): chr1:93264677-93315268
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 383 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427669.1; RP4-717I23.3-017; OTTHUMT00000029964.1; NONHSAT004506; ENST00000427669.5
Alternative gene names: ENSG00000223745.1; RP4-717I23.3; OTTHUMG00000010705.3; ENSG00000223745.3; ENSG00000223745.7; ENST00000440778.1; CCDC18-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0691 non-coding 
CPAT coding probability 11.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:41 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMED5-1:27
4.0 CCDC18-AS1:41
4.1 CCDC18-AS1:41
5.0 CCDC18-AS1:41
5.1 CCDC18-AS1:41
5.2 CCDC18-AS1:41