Transcript: CCDC18-AS1:70

Basic information

LNCipedia transcript ID: CCDC18-AS1:70 
LNCipedia gene ID: CCDC18-AS1
Location (hg38): chr1:93311280-93337688
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 743 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223745.3|ENST00000436200.2
Alternative gene names: ENST00000440778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.5273 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC18-AS1:70 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CCDC18-AS1:70
5.0 CCDC18-AS1:70
5.1 CCDC18-AS1:70
5.2 CCDC18-AS1:70