Transcript: CCDC183-AS1:1

Basic information

LNCipedia transcript ID: CCDC183-AS1:1 
HGNC Gene Symbol: CCDC183-AS1    
HGNC Full Gene Name: CCDC183 antisense RNA 1
Ensembl Gene ID: ENSG00000228544
Ensembl Transcript ID: ENST00000414656
RefSeq ID: NR_024580
Location (hg38): chr9:136803927-136808848
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2386 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414656.1; RP11-216L13.8-001; OTTHUMT00000055132.1; NONHSAT135604; NR_024580; NR_024580.1
Alternative gene names: ENSG00000228544.1; RP11-216L13.8; OTTHUMG00000020946.1; CCDC183-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0771 non-coding 
CPAT coding probability 89.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CCDC183-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCN15-1:1
4.0 CCDC183-AS1:1
4.1 CCDC183-AS1:1
5.0 CCDC183-AS1:1
5.1 CCDC183-AS1:1
5.2 CCDC183-AS1:1