Transcript: CCDC39-AS1:4

Basic information

LNCipedia transcript ID: CCDC39-AS1:4 
LNCipedia gene ID: CCDC39-AS1
Location (hg38): chr3:180679568-180687894
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2354 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000243187.1|ENCT00000297862.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.4155 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC39-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CCDC39-AS1:4
5.0 CCDC39-AS1:4
5.1 CCDC39-AS1:4
5.2 CCDC39-AS1:4