Transcript: CCND2-AS1:1

Basic information

LNCipedia transcript ID: CCND2-AS1:1 
HGNC Gene Symbol: CCND2-AS1    
HGNC Full Gene Name: CCND2 antisense RNA 1
Ensembl Gene ID: ENSG00000255920
Ensembl Transcript ID: ENST00000539135
Location (hg38): chr12:4248765-4276184
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 555 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539135.1; RP11-264F23.3-001; OTTHUMT00000398507.1; NONHSAT025947
Alternative gene names: ENSG00000256164.1; RP11-264F23.3; OTTHUMG00000168157.1; CCND2-AS1; ; ENSG00000255920.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.6252 non-coding 
CPAT coding probability 11.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CCND2-AS1:1 yes no no no

Available literature

  1. Zhang (2017), Highly expressed lncRNA CCND2-AS1 promotes glioma cell proliferation through Wnt/β-catenin signaling., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF23-2:1
4.0 CCND2-AS1:1
4.1 CCND2-AS1:1
5.0 CCND2-AS1:1
5.1 CCND2-AS1:1
5.2 CCND2-AS1:1