Transcript: CD27-AS1:6

Basic information

LNCipedia transcript ID: CD27-AS1:6 
LNCipedia gene ID: CD27-AS1
Location (hg38): chr12:6439001-6451517
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1064 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT026068
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.021 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD27-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAMP1-1:12
4.0 CD27-AS1:6
4.1 CD27-AS1:6
5.0 CD27-AS1:6
5.1 CD27-AS1:6
5.2 CD27-AS1:6