Transcript: CD44-AS1:3

Basic information

LNCipedia transcript ID: CD44-AS1:3 
HGNC Gene Symbol: CD44-AS1    
HGNC Full Gene Name: CD44 antisense RNA 1
Ensembl Gene ID: ENSG00000255443
Ensembl Transcript ID: ENST00000528869
Location (hg38): chr11:35210343-35214985
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 587 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528869.1; RP1-68D18.4-001; OTTHUMT00000389174.1
Alternative gene names: ENSG00000255443.1; RP1-68D18.4; OTTHUMG00000166327.1; CD44-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.4328 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CD44-AS1:3 no no no no

Available literature

  1. Zhou (2017), Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma., Mol. Cancer

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A2-1:1
4.0 lnc-SLC1A2-1:1
4.1 lnc-SLC1A2-1:1
5.0 lnc-SLC1A2-1:1
5.1 CD44-AS1:2
5.2 CD44-AS1:3