Transcript: CDC42-IT1:1

Basic information

LNCipedia transcript ID: CDC42-IT1:1 
LNCipedia gene ID: CDC42-IT1
Location (hg38): chr1:22059197-22064199
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 690 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000431803.1; CDC42-IT1-001; OTTHUMT00000008082.1; NONHSAT001471
Alternative gene names: ENSG00000230068.1; CDC42-IT1; OTTHUMG00000002890.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.8646 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDC42-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CELA3A-2:1
4.0 CDC42-IT1:1
4.1 CDC42-IT1:1
5.0 CDC42-IT1:1
5.1 CDC42-IT1:1
5.2 CDC42-IT1:1