Transcript: CDC42-IT1:2

Basic information

LNCipedia transcript ID: CDC42-IT1:2 
HGNC Gene Symbol: CDC42-IT1    
HGNC Full Gene Name: CDC42 intronic transcript 1
Ensembl Gene ID: ENSG00000230068
Ensembl Transcript ID: ENST00000431803
Location (hg38): chr1:22059197-22064199
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 692 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001470; ENST00000431803.2
Alternative gene names: ENSG00000230068.2; CDC42-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.8646 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDC42-IT1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CELA3A-2:2
4.0 CDC42-IT1:2
4.1 CDC42-IT1:2
5.0 CDC42-IT1:2
5.1 CDC42-IT1:2
5.2 CDC42-IT1:2