Transcript: CDRT8:1

Basic information

LNCipedia transcript ID: CDRT8:1 
HGNC Gene Symbol: CDRT8    
HGNC Full Gene Name: CMT1A duplicated region transcript 8
Ensembl Gene ID: ENSG00000265163
Ensembl Transcript ID: ENST00000579752
Location (hg38): chr17:15105237-15106187
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 467 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579752.1; RP11-924A14.1-001; OTTHUMT00000443713.1
Alternative gene names: ENSG00000265163.1; RP11-924A14.1; OTTHUMG00000178871.1; CDRT8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.171 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDRT8:1 no no no no

Available literature

  1. Inoue (2001), The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMP22-3:1
4.0 CDRT8:1
4.1 CDRT8:1
5.0 CDRT8:1
5.1 CDRT8:1
5.2 CDRT8:1