Transcript: CDRT8:2

Basic information

LNCipedia transcript ID: CDRT8:2 
LNCipedia gene ID: CDRT8
RefSeq ID: NR_103559
Location (hg38): chr17:15104985-15106187
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT145787; NR_103559; NR_103559.1
Alternative gene names: ; CDRT8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.171 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CDRT8:2 no no no no

Available literature

  1. Inoue (2001), The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PMP22-3:2
4.0 CDRT8:2
4.1 CDRT8:2
5.0 CDRT8:2
5.1 CDRT8:2
5.2 CDRT8:2