Transcript: CEBPA-DT:16

Basic information

LNCipedia transcript ID: CEBPA-DT:16 
LNCipedia gene ID: CEBPA-DT
RefSeq ID: NR_026887
Location (hg38): chr19:33302857-33305057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2201 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT064246; NR_026887; NR_026887.1
Alternative gene names: ; CEBPA-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.3339 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CEBPA-DT:16 no no no no

Available literature

  1. Ke (2017), The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer., Oncotarget
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEBPG-1:2
4.0 CEBPA-AS1:1
4.1 CEBPA-AS1:1
5.0 CEBPA-AS1:1
5.1 CEBPA-DT:6
5.2 CEBPA-DT:16