Transcript: CEBPA-DT:17

Basic information

LNCipedia transcript ID: CEBPA-DT:17 
HGNC Gene Symbol: CEBPA-DT    
HGNC Full Gene Name: CEBPA divergent transcript
Ensembl Gene ID: ENSG00000267296
Ensembl Transcript ID: ENST00000592982
Location (hg38): chr19:33302857-33305054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2198 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592982.2
Alternative gene names: ENSG00000267296.2; CEBPA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.3339 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CEBPA-DT:17 no no no no

Available literature

  1. Ke (2017), The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer., Oncotarget
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEBPG-1:3
4.0 CEBPA-AS1:2
4.1 CEBPA-AS1:2
5.0 CEBPA-AS1:2
5.1 CEBPA-DT:7
5.2 CEBPA-DT:17