Transcript: CEBPA-DT:20

Basic information

LNCipedia transcript ID: CEBPA-DT:20 
LNCipedia gene ID: CEBPA-DT
Location (hg38): chr19:33303221-33305446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2226 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA674:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.3339 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CEBPA-DT:20 no no no no

Available literature

  1. Ke (2017), The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer., Oncotarget
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CEBPA-AS1:5
4.1 CEBPA-AS1:5
5.0 CEBPA-AS1:5
5.1 CEBPA-DT:10
5.2 CEBPA-DT:20