Transcript: CEBPA-DT:21

Basic information

LNCipedia transcript ID: CEBPA-DT:21 
LNCipedia gene ID: CEBPA-DT
Ensembl Gene ID: ENSG00000267130
Ensembl Transcript ID: ENST00000593041
Location (hg38): chr19:33305036-33309387
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064249; ENST00000593041.1
Alternative gene names: ENSG00000267130.1; CTD-2540B15.9; ; AC008738.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.633 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CEBPA-DT:21 no no no no

Available literature

  1. Ke (2017), The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer., Oncotarget
  2. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CEBPG-1:5
4.0 CEBPA-AS1:6
4.1 CEBPA-AS1:6
5.0 CEBPA-AS1:6
5.1 CEBPA-DT:11
5.2 CEBPA-DT:21