Transcript: CECR3:1

Basic information

LNCipedia transcript ID: CECR3:1 
HGNC Gene Symbol: CECR3    
HGNC Full Gene Name: cat eye syndrome chromosome region, candidate 3
Ensembl Gene ID: ENSG00000241832
Ensembl Transcript ID: ENST00000428828
RefSeq ID: NR_038398
Location (hg38): chr22:17256859-17266733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1915 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428828.1; CECR3-001; OTTHUMT00000316076.1; NONHSAT083203; NR_038398.2
Alternative gene names: ENSG00000241832.1; CECR3; OTTHUMG00000150063.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.4066 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CECR3:1 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CECR1-1:1
4.0 CECR3:1
4.1 CECR3:1
5.0 CECR3:1
5.1 CECR3:1
5.2 CECR3:1