Transcript: CECR3:2

Basic information

LNCipedia transcript ID: CECR3:2 
LNCipedia gene ID: CECR3
Location (hg38): chr22:17256860-17266733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1914 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_038398
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.4066 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CECR3:2 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CECR1-1:2
4.0 CECR3:2
4.1 CECR3:2
5.0 CECR3:2
5.1 CECR3:2
5.2 CECR3:2