Transcript: CFAP58-DT:8

Basic information

LNCipedia transcript ID: CFAP58-DT:8 
LNCipedia gene ID: CFAP58-DT
RefSeq ID: NR_108036
Location (hg38): chr10:104351301-104353575
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1085 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108036; NR_108036.1
Alternative gene names: ; CFAP58-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.9896 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFAP58-DT:8 no no no no

Available literature

  1. Xie (2018), LncITPRIP-1 Positively Regulates Innate Immune Response through Promoting Oligomerization and Activation of MDA5., J. Virol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITPRIP-1:2
4.0 CFAP58-AS1:2
4.1 CFAP58-AS1:2
5.0 CFAP58-AS1:2
5.1 CFAP58-DT:3
5.2 CFAP58-DT:8