Transcript: CFLAR-AS1:2

Basic information

LNCipedia transcript ID: CFLAR-AS1:2 
LNCipedia gene ID: CFLAR-AS1
RefSeq ID: NR_040030
Location (hg38): chr2:201140289-201157792
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1041 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415011.1; CFLAR-AS1-001; OTTHUMT00000336719.1; NR_040030; NR_040030.1
Alternative gene names: ENSG00000226312.2; CFLAR-AS1; OTTHUMG00000154713.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.9296 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFLAR-AS1:2 no no no no

Available literature

  1. Hu (2016), Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM126B-2:1
4.0 CFLAR-AS1:2
4.1 CFLAR-AS1:2
5.0 CFLAR-AS1:2
5.1 CFLAR-AS1:2
5.2 CFLAR-AS1:2