Transcript: CFLAR-AS1:20

Basic information

LNCipedia transcript ID: CFLAR-AS1:20 
LNCipedia gene ID: CFLAR-AS1
Location (hg38): chr2:201144136-201151157
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT076375; ENST00000598453.1
Alternative gene names: ENSG00000226312.3; CFLAR-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2043 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFLAR-AS1:20 no no no no

Available literature

  1. Hu (2016), Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM126B-2:10
4.0 CFLAR-AS1:20
4.1 CFLAR-AS1:20
5.0 CFLAR-AS1:20
5.1 CFLAR-AS1:20
5.2 CFLAR-AS1:20