Transcript: CFLAR-AS1:27

Basic information

LNCipedia transcript ID: CFLAR-AS1:27 
HGNC Gene Symbol: CFLAR-AS1    
HGNC Full Gene Name: CFLAR antisense RNA 1
Ensembl Gene ID: ENSG00000226312
Ensembl Transcript ID: ENST00000474886
Location (hg38): chr2:201140284-201144196
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 223 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000474886.2; CFLAR-AS1-002; OTTHUMT00000336735.2; NONHSAT076371; ENST00000474886.4
Alternative gene names: ENSG00000226312.2; CFLAR-AS1; OTTHUMG00000154713.2; ENSG00000226312.3; ENSG00000226312.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFLAR-AS1:27 no no no no

Available literature

  1. Hu (2016), Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM126B-2:2
4.0 CFLAR-AS1:27
4.1 CFLAR-AS1:27
5.0 CFLAR-AS1:27
5.1 CFLAR-AS1:27
5.2 CFLAR-AS1:27