Transcript: CFLAR-AS1:7

Basic information

LNCipedia transcript ID: CFLAR-AS1:7 
HGNC Gene Symbol: CFLAR-AS1    
HGNC Full Gene Name: CFLAR antisense RNA 1
Ensembl Gene ID: ENSG00000226312
Ensembl Transcript ID: ENST00000598509
Location (hg38): chr2:201149466-201151160
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 358 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT076379; ENST00000598509.1; ENST00000598509.5
Alternative gene names: ENSG00000226312.3; CFLAR-AS1; ENSG00000226312.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2043 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFLAR-AS1:7 no no no no

Available literature

  1. Hu (2016), Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM126B-2:7
4.0 CFLAR-AS1:7
4.1 CFLAR-AS1:7
5.0 CFLAR-AS1:7
5.1 CFLAR-AS1:7
5.2 CFLAR-AS1:7