Transcript: CFTR-AS1:3

Basic information

LNCipedia transcript ID: CFTR-AS1:3 
HGNC Gene Symbol: CFTR-AS1    
HGNC Full Gene Name: CFTR antisense RNA 1
Ensembl Gene ID: ENSG00000232661
Ensembl Transcript ID: ENST00000441019
Location (hg38): chr7:117560733-117564676
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 221 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441019.1; AC000111.3-001; OTTHUMT00000141917.1; NONHSAT122947
Alternative gene names: ENSG00000232661.1; AC000111.3; OTTHUMG00000066356.1; AC000111.1; CFTR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.2404 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CFTR-AS1:3 yes no no no

Available literature

  1. Saayman (2016), Long Non-coding RNA BGas Regulates the Cystic Fibrosis Transmembrane Conductance Regulator., Mol. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASZ1-1:1
4.0 lnc-ASZ1-1:1
4.1 lnc-ASZ1-1:1
5.0 lnc-ASZ1-1:1
5.1 CFTR-AS1:2
5.2 CFTR-AS1:3