Transcript: CHKB-DT:33

Basic information

LNCipedia transcript ID: CHKB-DT:33 
LNCipedia gene ID: CHKB-DT
Location (hg38): chr22:50582980-50595498
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1058 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT087511
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.9425 non-coding 
CPAT coding probability 29.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:33 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK8IP2-1:15
4.0 CHKB-AS1:1
4.1 CHKB-AS1:1
5.0 CHKB-AS1:1
5.1 CHKB-DT:2
5.2 CHKB-DT:33