Transcript: CHKB-DT:34

Basic information

LNCipedia transcript ID: CHKB-DT:34 
LNCipedia gene ID: CHKB-DT
Location (hg38): chr22:50583026-50583924
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 625 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00029327
Alternative gene names: XLOC_014288; linc-MAPK8IP2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.3473 non-coding 
CPAT coding probability 28.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:34 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAPK8IP2-1:1
3.1 lnc-MAPK8IP2-1:1
4.0 CHKB-AS1:2
4.1 CHKB-AS1:2
5.0 CHKB-AS1:2
5.1 CHKB-DT:3
5.2 CHKB-DT:34