Transcript: CHKB-DT:35

Basic information

LNCipedia transcript ID: CHKB-DT:35 
HGNC Gene Symbol: CHKB-DT    
HGNC Full Gene Name: CHKB divergent transcript
Ensembl Gene ID: ENSG00000205559
Ensembl Transcript ID: ENST00000380711
Location (hg38): chr22:50583026-50583877
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000380711.3; CTA-384D8.20-001; OTTHUMT00000316839.1
Alternative gene names: ENSG00000205559.3; CTA-384D8.20; OTTHUMG00000150208.1; CHKB-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.3473 non-coding 
CPAT coding probability 28.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:35 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK8IP2-1:2
4.0 CHKB-AS1:3
4.1 CHKB-AS1:3
5.0 CHKB-AS1:3
5.1 CHKB-DT:4
5.2 CHKB-DT:35