Transcript: CHKB-DT:38

Basic information

LNCipedia transcript ID: CHKB-DT:38 
LNCipedia gene ID: CHKB-DT
RefSeq ID: NR_110536
Location (hg38): chr22:50583026-50595281
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 685 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110536; NR_110536.1
Alternative gene names: ; CHKB-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.9425 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:38 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK8IP2-1:18
4.0 CHKB-AS1:6
4.1 CHKB-AS1:6
5.0 CHKB-AS1:6
5.1 CHKB-DT:7
5.2 CHKB-DT:38