Transcript: CHKB-DT:40

Basic information

LNCipedia transcript ID: CHKB-DT:40 
LNCipedia gene ID: CHKB-DT
Location (hg38): chr22:50583124-50596885
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4386 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000205559.3|ENCT00000279981.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.3754 non-coding 
CPAT coding probability 3.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:40 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CHKB-AS1:28
5.0 CHKB-AS1:28
5.1 CHKB-DT:9
5.2 CHKB-DT:40