Transcript: CHKB-DT:59

Basic information

LNCipedia transcript ID: CHKB-DT:59 
LNCipedia gene ID: CHKB-DT
Location (hg38): chr22:50592063-50595542
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 914 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029850; NONHSAT087525
Alternative gene names: XLOC_014288; linc-MAPK8IP2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3501 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:59 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAPK8IP2-1:11
3.1 lnc-MAPK8IP2-1:12
4.0 CHKB-AS1:21
4.1 CHKB-AS1:21
5.0 CHKB-AS1:21
5.1 CHKB-DT:28
5.2 CHKB-DT:59