Transcript: CHKB-DT:63

Basic information

LNCipedia transcript ID: CHKB-DT:63 
LNCipedia gene ID: CHKB-DT
Ensembl Gene ID: ENSG00000272940
Ensembl Transcript ID: ENST00000609758
Location (hg38): chr22:50597152-50597599
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 448 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609758.1
Alternative gene names: ENSG00000272940.1; CTA-384D8.33; ; U62317.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.8808 non-coding 
CPAT coding probability 10.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHKB-DT:63 yes no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK8IP2-1:25
4.0 CHKB-AS1:25
4.1 CHKB-AS1:25
5.0 CHKB-AS1:25
5.1 CHKB-DT:32
5.2 CHKB-DT:63