Transcript: CHMP1B-AS1:3

Basic information

LNCipedia transcript ID: CHMP1B-AS1:3 
HGNC Gene Symbol: CHMP1B-AS1    
HGNC Full Gene Name: CHMP1B antisense RNA 1
Ensembl Gene ID: ENSG00000267165
Ensembl Transcript ID: ENST00000586474
Location (hg38): chr18:11851414-11852751
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT058319; ENST00000586474.1
Alternative gene names: ENSG00000267165.1; RP11-78A19.3; CHMP1B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.6461 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHMP1B-AS1:3 yes no no no

Available literature

  1. Bryzghalov (2016), Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions., Acta Biochim. Pol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPPE1-3:1
4.0 lnc-MPPE1-3:1
4.1 lnc-MPPE1-2:8
5.0 lnc-MPPE1-2:8
5.1 CHMP1B-AS1:2
5.2 CHMP1B-AS1:3