Transcript: CHODL-AS1:1

Basic information

LNCipedia transcript ID: CHODL-AS1:1 
HGNC Gene Symbol: CHODL-AS1    
HGNC Full Gene Name: CHODL antisense RNA 1
Ensembl Gene ID: ENSG00000231755
Ensembl Transcript ID: ENST00000447175
Location (hg38): chr21:17835016-17885608
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1117 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447175; ENST00000447175.1; CHODL-AS1-001; OTTHUMT00000158194.1; NONHSAT081298
Alternative gene names: ENSG00000231755; NCRNA00157; ENSG00000231755.1; CHODL-AS1; OTTHUMG00000074500.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.6948 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHODL-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf91-1:1
3.1 lnc-C21orf91-2:1
4.0 CHODL-AS1:1
4.1 CHODL-AS1:1
5.0 CHODL-AS1:1
5.1 CHODL-AS1:1
5.2 CHODL-AS1:1