Transcript: CHRM3-AS1:1

Basic information

LNCipedia transcript ID: CHRM3-AS1:1 
HGNC Gene Symbol: CHRM3-AS1    
HGNC Full Gene Name: CHRM3 antisense RNA 1
Ensembl Gene ID: ENSG00000234601
Ensembl Transcript ID: ENST00000444721
Location (hg38): chr1:239898016-239899872
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 486 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444721.1; CHRM3-AS1-001; OTTHUMT00000095647.1; NONHSAT010484
Alternative gene names: ENSG00000234601.1; CHRM3-AS1; OTTHUMG00000039650.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3132 non-coding 
CPAT coding probability 11.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHRM3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GREM2-5:1
4.0 CHRM3-AS1:1
4.1 CHRM3-AS1:1
5.0 CHRM3-AS1:1
5.1 CHRM3-AS1:1
5.2 CHRM3-AS1:1