Transcript: CHRM3-AS2:11

Basic information

LNCipedia transcript ID: CHRM3-AS2:11 
LNCipedia gene ID: CHRM3-AS2
Location (hg38): chr1:239703384-239704154
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 771 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT010477; ENST00000596999.1
Alternative gene names: ENSG00000233355.2; CHRM3-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.1051 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHRM3-AS2:11 yes no no no

Available literature

  1. Yerushalmi (2014), Characterization of the human cumulus cell transcriptome during final follicular maturation and ovulation., Mol. Hum. Reprod.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GREM2-6:7
4.0 CHRM3-AS2:11
4.1 CHRM3-AS2:11
5.0 CHRM3-AS2:11
5.1 CHRM3-AS2:11
5.2 CHRM3-AS2:11