Transcript: CHRM3-AS2:6

Basic information

LNCipedia transcript ID: CHRM3-AS2:6 
LNCipedia gene ID: CHRM3-AS2
Location (hg38): chr1:239707124-239719119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 950 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000458325; ENST00000458325.1; CHRM3-AS2-003; OTTHUMT00000314627.1; NONHSAT010481
Alternative gene names: ENSG00000233355; RP11-343J24.1; ENSG00000233355.1; CHRM3-AS2; OTTHUMG00000039648.2; ENSG00000233355.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9577 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHRM3-AS2:6 yes no no no

Available literature

  1. Yerushalmi (2014), Characterization of the human cumulus cell transcriptome during final follicular maturation and ovulation., Mol. Hum. Reprod.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GREM2-3:1
3.1 lnc-GREM2-6:1
4.0 CHRM3-AS2:6
4.1 CHRM3-AS2:6
5.0 CHRM3-AS2:6
5.1 CHRM3-AS2:6
5.2 CHRM3-AS2:6