Transcript: CHRM3-AS2:7

Basic information

LNCipedia transcript ID: CHRM3-AS2:7 
LNCipedia gene ID: CHRM3-AS2
RefSeq ID: NR_103776
Location (hg38): chr1:239707126-239719119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 893 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT010482; NR_103776; NR_103776.1
Alternative gene names: ; CHRM3-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.424 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CHRM3-AS2:7 yes no no no

Available literature

  1. Yerushalmi (2014), Characterization of the human cumulus cell transcriptome during final follicular maturation and ovulation., Mol. Hum. Reprod.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GREM2-6:6
4.0 CHRM3-AS2:7
4.1 CHRM3-AS2:7
5.0 CHRM3-AS2:7
5.1 CHRM3-AS2:7
5.2 CHRM3-AS2:7