Transcript: CIRBP-AS1:1

Basic information

LNCipedia transcript ID: CIRBP-AS1:1 
HGNC Gene Symbol: CIRBP-AS1    
HGNC Full Gene Name: CIRBP antisense RNA 1
RefSeq ID: NR_027271
Location (hg38): chr19:1267471-1270260
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1356 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060248; NR_027271; NR_027271.1
Alternative gene names: MGC39338; CIRBP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5747 non-coding 
CPAT coding probability 13.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CIRBP-AS1:1 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf26-4:1
4.0 CIRBP-AS1:1
4.1 CIRBP-AS1:1
5.0 CIRBP-AS1:1
5.1 CIRBP-AS1:1
5.2 CIRBP-AS1:1