Transcript: CIRBP-AS1:2

Basic information

LNCipedia transcript ID: CIRBP-AS1:2 
LNCipedia gene ID: CIRBP-AS1
Location (hg38): chr19:1268166-1270241
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 642 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000585832.1
Alternative gene names: ENSG00000267493.2; CIRBP-AS1; MGC39338


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4682 non-coding 
CPAT coding probability 14.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CIRBP-AS1:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf26-4:2
4.0 CIRBP-AS1:2
4.1 CIRBP-AS1:2
5.0 CIRBP-AS1:2
5.1 CIRBP-AS1:2
5.2 CIRBP-AS1:2